Package: MixTwice 2.0
MixTwice: Large-Scale Hypothesis Testing by Variance Mixing
Implements large-scale hypothesis testing by variance mixing. It takes two statistics per testing unit -- an estimated effect and its associated squared standard error -- and fits a nonparametric, shape-constrained mixture separately on two latent parameters. It reports local false discovery rates (lfdr) and local false sign rates (lfsr). Manuscript describing algorithm of MixTwice: Zheng et al(2021) <doi:10.1093/bioinformatics/btab162>.
Authors:
MixTwice_2.0.tar.gz
MixTwice_2.0.zip(r-4.5)MixTwice_2.0.zip(r-4.4)MixTwice_2.0.zip(r-4.3)
MixTwice_2.0.tgz(r-4.4-any)MixTwice_2.0.tgz(r-4.3-any)
MixTwice_2.0.tar.gz(r-4.5-noble)MixTwice_2.0.tar.gz(r-4.4-noble)
MixTwice_2.0.tgz(r-4.4-emscripten)MixTwice_2.0.tgz(r-4.3-emscripten)
MixTwice.pdf |MixTwice.html✨
MixTwice/json (API)
| # Install 'MixTwice' in R: |
| install.packages('MixTwice', repos = c('https://zzheng68.r-universe.dev', 'https://cloud.r-project.org')) |
- peptide_data - Peptide array data example
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:f31a2993c7. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 15 2024 |
| R-4.5-win | NOTE | Sep 15 2024 |
| R-4.5-linux | NOTE | Sep 15 2024 |
| R-4.4-win | NOTE | Sep 15 2024 |
| R-4.4-mac | NOTE | Sep 15 2024 |
| R-4.3-win | NOTE | Sep 15 2024 |
| R-4.3-mac | NOTE | Sep 15 2024 |
Exports:mixtwice
Dependencies:alabamaashretrunctfdrtoolinvgammairlbaIsolatticeMatrixmixsqpnumDerivRcppRcppArmadilloSQUAREMtruncnorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Large-Scale Hypothesis Testing by Variance Mixing | MixTwice-package MixTwice |
| Large-scale hypothesis testing by variance mixing | mixtwice |
| Peptide array data example | peptide_data |
