Package: MixTwice 2.0
MixTwice: Large-Scale Hypothesis Testing by Variance Mixing
Implements large-scale hypothesis testing by variance mixing. It takes two statistics per testing unit -- an estimated effect and its associated squared standard error -- and fits a nonparametric, shape-constrained mixture separately on two latent parameters. It reports local false discovery rates (lfdr) and local false sign rates (lfsr). Manuscript describing algorithm of MixTwice: Zheng et al(2021) <doi:10.1093/bioinformatics/btab162>.
Authors:
MixTwice_2.0.tar.gz
MixTwice_2.0.zip(r-4.7)MixTwice_2.0.zip(r-4.6)MixTwice_2.0.zip(r-4.5)
MixTwice_2.0.tgz(r-4.6-any)MixTwice_2.0.tgz(r-4.5-any)
MixTwice_2.0.tar.gz(r-4.7-any)MixTwice_2.0.tar.gz(r-4.6-any)
MixTwice_2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MixTwice/json (API)
| # Install 'MixTwice' in R: |
| install.packages('MixTwice', repos = c('https://zzheng68.r-universe.dev', 'https://cloud.r-project.org')) |
- peptide_data - Peptide array data example
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:f31a2993c7. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 104 | ||
| source / vignettes | OK | 137 | ||
| linux-release-x86_64 | NOTE | 100 | ||
| macos-release-arm64 | NOTE | 150 | ||
| macos-oldrel-arm64 | NOTE | 163 | ||
| windows-devel | NOTE | 103 | ||
| windows-release | NOTE | 79 | ||
| windows-oldrel | NOTE | 64 | ||
| wasm-release | OK | 91 |
Exports:mixtwice
Dependencies:alabamaashretrunctfdrtoolinvgammairlbaIsolatticeMatrixmixsqpnumDerivRcppRcppArmadilloSQUAREMtruncnorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Large-Scale Hypothesis Testing by Variance Mixing | MixTwice-package MixTwice |
| Large-scale hypothesis testing by variance mixing | mixtwice |
| Peptide array data example | peptide_data |
